Anda Trifan

  • Program Year: 3
  • Academic Institution: University of Illinois at Urbana-Champaign
  • Field of Study: Theoretical and Computational Biophysics
  • Academic Advisor: Emad Tajkhorshid
  • Practicum(s):
    Argonne National Laboratory (2020)
  • Degree(s):
    B.S. Chemistry, DePaul University, 2012

Publications

Lorenzo Casalino, Abigail Dommer, Zied Gaieb, Emilia P. Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Heng Ma, Hyungro Lee, Anthony Bogetti, Syma Khalid, Lillian Chong, Carlos Simmerling, David J. Hardy, Julio D.C. Maia, James C. Phillips, Thorsten Kurth, Abraham Stern, Lei Huang, John McCalpin, Mahidhar Tatineni, Tom Gibbs, John E. Stone, Shantenu Jha, Arvind Ramanathan, Rommie E. Amaro. AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics. Supercomputing ’20, 2020



Hyungro Lee, Andre Merzky, Li Tan, Mikhail Titov, Matteo Turilli, Dario Alfe, Agastya Bhati,Alexander Brace, AustinClyde, Peter Coveney, Heng Ma, Arvind Ramanathan, Rick Stevens, Anda Trifan, Hubertus Van Dam, Shunzhou Wan, SeanWilkinson, Shantenu Jha. Scalable HPC & AI Infrastructure for COVID-19 Therapeutics. Submitted for review in IPDPS,2020.


Heng Ma, Austin Clyde, Anda Trifan, Venkatram Vishwanath, Arvind Ramanathan, Debsindhu Bhowmik, Shantenu Jha. Benchmarking Machine Learning Workloads in Structural Bioinformatics Applications. Challenge20, 2020



Janina Sprenger, Anda Trifan, Neal Patel Ashley Vanderbeck, Jenny Bredtfeldt, Emad Tajkhorshid, Roger Rowlett, Leila Lo Leggio, Karin S. Ã…kerfeldt and Sara Linse . Calmodulin complexes with brain and muscle creatine kinase peptides. In preparation for JMB, 2020



Anda Trifan, Josh V. Vermaas, and Emad Tajkhorshid. Systematic study of the KRas functional regions: HVR linker’s important role in orienting the G-domain. In preparation, 2020



Aymen Al Saadi, Dario Alfe, Yadu Babuji, Agastya Bhati, Ben Blaiszik, Thomas Brettin, Kyle Chard, Ryan Chard, PeterCoveney, Anda Trifan, Alexander Brace, Austin Clyde, Ian Foster, Tom Gibbs, Shantenu Jha, Kristopher Keipert,Thorsten Kurth, Dieter Kranzlm ̈uller, Hyungro Lee, Zhuozhao Li, Heng Ma, Andre Merzky, Gerald Mathias, AlexanderPartin, Junqi Yin, Arvind Ramanathan, Ashka Shah, Abraham Stern, Rick Stevens, Li Tan, Mikhail Titov, Aristeidis Tsaris, Matteo Turilli, Huub Van Dam, Shunzhou Wan, David Wifling. IMPECCABLE: Integrated Modeling PipelinE forCOVID Cure by Assessing Better LEads. Submitted for ACM Gordon Bell Prize consideration, 2020.



Alexander Brace, Michael Salim, Vishal Subbiah, HengMa, Murali Emani, Anda Trifan, Corey Adams, Thomas Uram, Hyunseung Yoo, Andrew Hock, Jessica Liu, Venkatram Vishwanath, Arvind Ramanathan. Stream-AI-MD: StreamingAI-driven Adaptive Molecular Simulations Targeting the SARS-CoV-2 NSP16/NSP10 Complex. Submitted for ACM GordonBell Prize consideration, 2020.

Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation
Melanie P. Muller, Tao Jiang, Chang Sun, Muyun Lihan, Shashank Pant, Paween Mahinthichaichan, Anda Trifan, and Emad Tajkhorshid
Chemical Reviews Article
DOI: 10.1021/acs.chemrev.8b00608


G.B. Kharas, N.E. Anderson, A. Bajor, A.C. Colbert, A. Coleman, C.E. Gregory, J. Hayes, J. Lantin, J.M. Malecki, T.C. Murphy, A. Oprescu, B.F. Rydzon, and I. Timoshevskaya. Novel Copolymers of Di- and Trialkoxy Ring-substituted Ethyl 2-Cyano-3-phenyl-2-propenoates and Styrene. J. Macromol. Sci. A50 (4) 276-280 (2013)




Posters
Structural Factors Controlling Orientation of K-Ras G-Domain Membrane Binding (2019)
DEPARTMENT OF ENERGY, CSGF, WASHINGTON VA
AMERICAN CHEMICAL SOCIETY, ORLANDO, FL
BIOPHYSICAL SOCIETY MEETING, BALTIMORE, MD

Orientation of KRAS catalytic domain and membrane association
Biophysical Society Meeting, San Francisco, CA (2018)

Awards

ACM Gordon Bell Special Prize for HPC-Based COVID-19 Research, SC20 Conference, 2020
Impact Argonne Award for Discovery, Argonne National Laboratory, 2020
Impact Argonne Award for Innovation, Argonne National Laboratory, 2020
Impact Argonne Award for Extraordinary Effort, Argonne National Laboratory, 2020
BIOCHEMISTRY TRAVEL AWARD (2019)
BIOPHYSICS TRAVEL AWARD (2019)
Colin A Wraight Graduate Award (2017)
Biophysics Fellowship (2017)
Kelly Services Emerald Award (2014)
C. and K. Jonaitis Chemistry Award (2012)
DePaul University Department of Chemistry Scholarship (2011)
DePaul University Presidential Scholarship (2009-2012)
DePaul University Dean's List (2009-2012)