Derek Macklin

  • Program Years: 2012-2016
  • Academic Institution: Stanford University
  • Field of Study: Computational and Systems Biology
  • Academic Advisor: Markus Covert
  • Practicum(s):
    Lawrence Berkeley National Laboratory (2014)
  • Degree(s):
    B.S. Computational and Systems Biology, University of California, Los Angeles, 2010

Current Status

  • Research Area: Computational and Systems Biology
  • Publications

    D.N. Macklin, R. Egan, Z. Wang. "FASTERp: Feature Array Search Tool for Estimating Resemblance of protein sequences." Bioengineering department retreat. November 21-23, 2014. Monterey, CA (Presentation, Awarded "Best Talk")

    D.N. Macklin, R. Egan, Z. Wang. "FASTERp: Feature Array Search Tool for Estimating Resemblance of protein sequences." JGI User Meeting. March 18-20, 2014. Walnut Creek, CA (Poster)

    D.N. Macklin*, N.A. Ruggero*, M.W. Covert. "The Future of Whole-Cell Modeling". Current Opinion in Biotechnology. 2014. 28: 111-115

    J.R. Karr, J.C. Sanghvi, D.N. Macklin, A. Arora, M.W. Covert. "WholeCellKB: model organism databases for comprehensive whole-cell models" Nucleic Acids Research. 2012. 41: Database issue. D787-92

    J.R. Karr*, J.C. Sanghvi*, D.N. Macklin, M.V. Gutschow, J.M. Jacobs, B. Bolival, N. Assad-Garcia, J.I. Glass, M.W. Covert. "A Whole-Cell Computational Model Predicts Phenotype from Genotype". Cell. 2012. 150(2): 389-401

    N.D. Maynard, D.N. Macklin, K. Kirkegaard, M.W. Covert. “Competing Pathways Control Host Resistance to Viral Infection”. Molecular Systems Biology. 2012. 8(567)

    J.R. Karr, J.C. Sanghvi, J.M. Jacobs, D.N. Macklin, M.W. Covert. “A Whole-Cell Model of M. genitalium”. Biology and Mathematics in the Bay Area. Nov. 19, 2011. San Francisco, CA (Poster)

    J.R. Karr, J.C. Sanghvi, J.M. Jacobs, D.N. Macklin, M.W. Covert. “A Whole-Cell Model of M. genitalium”. Biomedical Computation at Stanford. Nov. 12, 2011. Stanford, CA (Poster)

    J.R. Karr, J.C. Sanghvi, J.M. Jacobs, D.N. Macklin, M.W. Covert. “A Whole-Cell Model of M. genitalium”. Bioengineering Department Retreat. Oct. 7-9, 2011. Santa Cruz, CA (Poster)

    Macklin, D.N. “Controlled FES: Treatment for Sixth Nerve Palsy”. Honors Thesis and Presentation. June 2009.

    N.X. Fernando, D.N. Macklin, M.Y. Hsu, J.W. Judy, “An Embedded Wireless Neural Stimulation and Recording System”. Proc. 3rd Intl. IEEE EMBS Conference on Neural Eng., May 2-5, 2007, Kohala Coast, HI

    Awards

    Siebel Scholar, September 2015
    DOE SCGF (declined), May 2012
    NSF GRFP Honorable Mention, March 2012
    Stanford Graduate Fellowship, March 2010
    Graduation speaker for Computational and Systems Biology Interdepartmental Program, June 2010
    Member of Phi Beta Kappa, 2010-Present
    Graduated UCLA summa cum laude, June 2010
    Graduated UCLA with departmental honors, June 2010
    Dean's List, UCLA: 2006, 2007, 2008, 2009