
1

Thomas Fai 
A Discrete Model of the Red Blood Cell Cytoskeleton and its Use in Immersed Boundary Method Simulations

3

Melissa Yeung 
Lagrangian Coherent Structures and Invariant Regions: Three Perspectives


5

Sherwood Richers 
Local Simulations of the Magnetorotational Instability in Core Collapse Supernovae


7

Mary Benage 
Tying Textures of Breadcrust Bombs to the Dynamics of Their Transport Mechanisms

9

Scot Miller 
Evidence for an Unexpectedly Large Greenhouse Gas Impact From Natural Gas Extraction

11

Hansi Singh 
HighLatitude Orography and Climate: An HPC Modeling Study


13

Charles Frogner 
Quantitative Phenotyping of Mouse Behavior

15

Justin Lee 
An Interactive Highspeed Whole Slide Image Viewing System for Digital Pathology

17

Derek Macklin 
Toward a WholeCell Model of Escherichia coli

19

Michael Rosario 
Studying the Effect of Shape in Fast Biological Springs

21

Joshua Vermaas 
Design and Development of a SpecialPurpose in silico Solvent for Modeling LipidProtein Interaction in a Highly Mobile Membrane Mimetic


23

Carmeline Dsilva 
Validating Reduced Models Using Nonlinear Independent Component Analysis

25

Andrew Stine 
Harnessing Enzyme Promiscuity: Beyond Lock and Key


27

Devin Matthews 
NCC: A New, Nonorthogonally SpinAdapted CCSDTQ Program for Closed Shell Systems

29

Jarrod McClean 
Feynman's Clock, a New Variational Principle, and ParallelinTime Quantum Dynamics

31

Aaron Sisto 
Engineering the Flow of PhotoExcitation Energy in Single Molecules


33

Omar Hafez 
Automating the ImagetoAnalysis Pipeline in Biomechanics

35

Andrew Stershic 
FailureModeling Methods in Finite Element Simulations


37

Eileen Martin 
Application of Lifted Methods to Seismic Imaging

39

Victor Minden 
Spectral Methods for SeedSet Expansion on Graphs


41

Christopher Ivey 
Accurate and Conservative Volume of Fluid Advection Method for General Grids


43

Rogelio CardonaRivera 
A Computational Implementation of the EventIndexing Situation Model for the Algorithmic Manipulation of Salience

45

Sarah Loos 
Formal Verification of Distributed Aircraft Controllers


47

Christopher Quinn 
Finding Influences in a Network


49

Jamie Smedsmo 
Impact of Cellulosic Biofuel Production


51

Peter Maginot 
Towards High Order Accurate Thermal Radiative Transfer Solutions

53

Brian Powell 
An Advanced Algorithm for Construction of Integral Transport Matrix Method Operators Using Accumulation of Single Cell Coupling Factors


55

Samuel Blau 
Scalable Nonmarkovian Exciton Dynamics of Photosynthetic Complexes Using Atomistic Spectral Densities

57

Maxwell Hutchinson 
SelfConsistent Electronic Structure Calculations in the Shirley Reduced Basis: PlaneWave Accuracy at Reduced Computational Cost


2

Jason Bender 
Progress in the Physical Chemistry of Hypersonic Flows: A New Implementation of the Local Interpolating Moving Least Squares Method for Fitting Potential Energy Surfaces


4

Thomas Catanach 
Calculating Failure Probabilities of Water Distribution Systems through Subset Simulation

6

Evan Gawlik 
Finite Element Methods for MovingBoundary Problems: HighOrder Methods and Analysis


8

Seth Davidovits 
Tests of Limiters for Discontinuous Galerkin Advection Algorithms


10

Christopher Eldred 
Linear Properties of Numerical Schemes for the Shallow Water Equations

12

Brenhin Keller 
Statistical Geochemistry Reveals Geochemical Evolution of the Continental Crust

14

Phoebe Robinson 
ThreeDimensional Viscoelastic Models of the Earthquake Cycle


16

Aleah Caulin 
A Tale of a Whale: De Novo Assembly and Annotation of the Humpback Whale Genome to Provide Insight Into the Evolution of Cancer Suppression Mechanisms

18

Irene Kaplow 
Identifying Effects of Interbreeding with Neanderthals on Phenotype

20

Sarah Middleton 
Finding Similar RNA Secondary Structures Without Structure Prediction

22

Chris Smillie 
Community Divergence Predicts the Stability of the Human Microbiome


24

Heather Mayes 
Why Pucker? Electronic Structure Calculations to Illuminate a Ubiquitous Feature of CarbohydrateModifying Enzymes

26

Zachary Ulissi 
SpatioTemporal Measurement of Intracellular Nitric Oxide Using DNAWrapped SingleWalled Carbon Nanotubes


28

Robert Parrish 
Tensor HyperContraction: A Physically Motivated Compression of the Electron Repulsion Integral

30

Kenley Pelzer 
Quantum Biology: Elucidating Design Principles From Photosynthesis

32

Aurora PribramJones 
Tools for Thermal Density Functional Theory


34

Curtis Lee 
A Narrow Band GradientAugmented Level Set Method for Incompressible TwoPhase Flow

36

Jesse Lopez 
Modeling the Estuarine Turbidity Maxima of the Columbia River Estuary


38

Miles Lubin 
Revisiting Computing in Operations Research Using Julia

40

Matthew Zahr 
Rapid Topology Optimization using PathDependent ReducedOrder Models


42

Britni Crocker 
Probing the Human Brain: Characterizing the Highly Dimensional Neurophysiological Response of the Brain to Pulses of Electrical Current

44

Daniel Strouse 
Hierarchical LinearNonlinear Cascade Models of Dendritic Integration and Somatic Membrane Potential


46

Edgar Solomonik 
Parallel Algorithms for Coupled Cluster Calculations


48

Alexander Rattner 
MarmotViz: An Extensible Framework for Illustrative Visualization of TimeVarying Flows


50

Andrew Till 
Application of Nonlinear Krylov Acceleration to Radiative Transfer Problems


52

Eric Isaacs 
Computing the Ideal Strength of Atomically Thin Materials From First Principles

54

Dragos Velicanu 
Correlations and Flow in UltraRelativistic PbPb and pp collisions at the LHC


56

Miles Lopes 
The Convergence Rate of Majority Vote Under Exchangeability
