
1  Krzysztof Fidkowski  A HighOrder Discontinuous Galerkin Multigrid Solver for Aerodynamic Applications 

3  Paul Bauman  Coupling Continuum and Molecular Scales 
5  Nawaf BouRabee  Global Aspects of the Book Toss 
7  Jasmine Foo  Simulating fluidstructure interactions (FSI) using the spectral/hp element method 
9  Boyce Griffith  Simulating Cardiac Electrophysiology in Complex Geometries 
11  Samuel Schofield  Direct numerical simulation of jets in fluids with stable density stratification 

13  Gregory Novak  Simulations of the Lyman Alpha Forest 

15  Michael Driscoll  Rapid ReverseEngineering of Shewanella Gene Networks: Applications for Bioremediation 
17  Julian Mintseris  Optimizing Protein Representations with Information Theory 

19  Joshua Waterfall  Sloppy Modeling of Biological Signaling Networks 

21  Mary Biddy  Using Mechanical Constants to Predict Pour Points of Environmental Friendly Lubricants 

23  Heather Netzloff  Growing Potential Energy Surfaces: The Interface of Grow and GAMESS 

25  Kristine Cochran  Comparison of 3D SmallScale Yielding Fatigue Crack Closure Behavior using both Nonlinear and Linear Kinematic Hardening Plasticity Constitutive Models 
27  Alex Lindblad  SoftTissue and Needle Modeling for a RealTime Finite Element Based BiManual Surgical Suturing Simulator 

29  Bree Aldridge  Nonlinear Dynamics and Signaling Networks: Towards Understanding the DecisionMaking Mechanisms in the Apoptotic Signaling Network 

31  Yan Karklin  The Shape of RNA: can secondary structure alone predict RNA family? 
33  Brian Taylor  Computation of Cellular Detonation 

35  Aron Cummings  Molecular dynamics simulation of the thermal properties of yjunction carbon nanotubes 

37  Sommer Gentry  Haptic dancing: Human performance at haptic decoding with a vocabulary 
39  Amoolya Singh  Dynamics of Bacterial Chemotaxis 

41  Michael Barad  A Fourth Order Accurate Adaptive Mesh Refinement Method for Poisson’s Equation 

43  Matthew Wolinsky  Coupled Stratigraphic Evolution and Fluid Flow in Sedimentary Basins 

45  William Conley  Nonlinear Dynamcs in Tomlinson’s Model for Atomic Scale Friction 
47  Michael Greminger  RealTime ThreeDimensional Visualization of Microscope Image Sequences 
49  Nathaniel Morgan  Numerical Simulation of Multiphase Flow in Porous Media 

51  Gregory Davidson  Finite Element Transport using Wachspress Rational Functions on Quadrilaterals in Diffusive Regions 
53  Heath Hanshaw  Asymptotically Accurate Transport Discretization and Acceleration Schemes 

55  Kristopher Andersen  Origin of permanent electric dipoles in homonuclear niobium clusters 
57  Mark Rudner  Dynamics of 3D Spin Systems with NonAdiabatically Traversed Quantum Phase Transitions 

59  Ahna Girshick  Improved stereoscopic performance with consistent vergence and accommodative cues in a novel 3d display 

2  Matthew McNenly  Low Discrepancy Particle Simulation of Collisionless Flows 

4  Kevin Chu  Modeling of Ion Transport in Micro and NanoElectrochemical Systems 
6  Samuel Stechmann  Rotating Circular Peakons 

8  Marcelo Alvarez  21cm Emission and Absorption During Reionization 

10  William Triffo  Towards Understanding the Nature of the “Cochlear Amplifier”: Modeling the Physiology of the Outer Hair Cell 

12  Annette Evangelisti  Molecular evolution in the yeast transcriptional regulation network 

14  Owen Hehmeyer  Thermodynamics and Structure of Polymers in Confinement 
16  Ahmed Ismail  Multiresolution modeling of polymers using waveletaccelerated Monte Carlo 
18  Randall McDermott  Ensemble mean closure using OneDimensional Turbulence 
20  Christina Smith  CarParrinello Molecular Dynamics Simulation of Metal Oxide/Water Interfaces 
22  Obioma Uche  An Investigation of the Realizability of Correlation Functions 

24  Christopher Rinderspacher  Optimizing the Energy in Geminal Functional Theory 
26  Mary Ann Leung  Computational studies of a BEC trapped in multiple connected wells requiring efficient sparse matrix routines in a massively parallel processing environment 
28  Tod Pascal  DNA NanoSystems Simulations 

30  Benjamin Lewis  Prediction of Mammalian MicroRNA Targets 

32  Michael Wu  From Local Learning Rules to Systems of Nonlinear Volterra Integrodifferential Equations 

34  Kristen Grauman  Fast Contour Matching Using Approximate Earth Mover’s Distance 
36  Sarah Moussa  Machine Learning in Computational Genomics: Building Structural Protein Phylogenies 
38  David Schmidt  Communication Channels and Genetic Sequence Analysis 
40  Michael Wolf  Improving the Parallel Efficiency of Tau3P, a Parallel Electromagnetic Field Solver 

42  Jaydeep Bardhan  An Integral Formulation and Fast Solver for Biomolecule Electrostatic Analysis 

44  Richard Katz  Computational Geodynamics with PETSc 

46  Emma Rainey  Modeling icy satellite interiors: effects of grain sizedependent viscosity 

48  Jason Sese  Nanoengineering of Hybrid Carbon NanotubeMetal Nanocluster Composite Materials for Hydrogen Storage 
50  Brandon Wood  A Firstprinciples Study of Ionic Conductivity in Superionic Solids 

52  Elijah Newren  Computational Modeling of Platelet Aggregation and Blood Coagulation 

54  Mary Dunlop  Genetic Circuit Design: Ideas from Control Theory 
56  Seung Lee  Molecular Dynamics Study of Vinculin Activation due to Talin Binding 

58  Teresa Bailey  A Piecewise Linear Finite Element Discretization of the Diffusion Equation 