Alumni Profiles

Paul Loriaux

• Program Years: 2007-2011
• Academic Institution: University of California, San Diego
• Field of Study: Computational Biology
• Academic Advisor: Alexander Hoffmann
• Practicum(s):
  Argonne National Laboratory (2009)
• Degree(s):
  Ph.D. Bioinformatics and Systems Biology, University of California, San Diego, 2014
  M.S. Computer Science, Universty of California, San Diego, 2011
  B.S.E. Bioengineering, University of Washington, Seattle, 2001

Current Status

• Status: Computational Scientist, Nodality Inc.
• Research Area: Computational Biology
• Personal URL: https://www.linkedin.com/in/ploriaux

Publications

Publications:

Loriaux PM, Elkan C, and Hoffmann A. Kinetic network features are better predictors of TRAIL-induced cell death than static features. In preparation.

Loriaux PM, Hoffmann A. A protein turnover signaling motif controls the stimulus-sensitivity of stress response pathways. In review

Loriaux PM, Tesler G, and Hoffmann A. Characterizing the Relationship Between Steady State and Response Using Analytical Expressions for the Steady States of Mass Action Models. In review.

Loriaux PM and Hoffmann A. A framework for modeling the relationship between cellular steady-state and stimulus-responsiveness. Methods Cell Biol. 2012;110:81-109.

Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, Cheng C, Auburn RP, Davis MB, Domanus M, Shah PK, Morrison CA, Zieba J, Suchy S, Senderowicz L, Victorsen A, Bild NA, Grundstad AJ, Hanley D, MacAlpine DM, Mannervik M, Venken K, Bellen H, White R, Gerstein M, Russell S, Grossman RL, Ren B, Posakony JW, Kellis M, White KP. A cis-regulatory map of the Drosophila genome. Nature. 2011 Mar 24; 471(3779):527-51

Loriaux P and Hoffmann A. Of Elections and Cell-Death Decisions. Molecular Cell. 2009 May 10; doi:10.1016/j.molcel.2009.05.001

Zhang H, Liu AY, Loriaux P, Wollscheid B, Zhou Y, Watts JD, Aebersold R. Mass spectrometric detection of tissue proteins in plasma. Mol Cell Proteomics. 2006 Oct 9; PMID: 17030953

Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R. UniPep, a database for human N-linked glycosites: A Resource for Biomarker Discovery. Genome Biol. 2006 Aug 10;7(8): PMID: 16901351

Awards

2007-2011 DOE CSGF Fellow

2005-2007 NIH Training Grant recipient

2004 Honorable Mention, NSF Graduate Research Fellowship Program

2000-2001 Mary Gates Scholar